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    getConsQC.c File Reference

    Detailed Description

    getConsQC and getConsQCRange Implementation

    C code adaptation of Martin Shumway's consensus class script from cutAsm. Return values range from 0 to 23. A return value of 0 indicates an error has occured calculating the quality class. Quality classes 1-23 correspond to the quality classes used in TIGR Assembler.

    Definition in file getConsQC.c.

    Go to the source code of this file.

    Functions

    char libSlice_getConsQC (const libSlice_Slice *s, int highQualityThreshold)
     Calculates the quality class for a single slice.

    char * libSlice_getConsQCRange (const libSlice_Slice s[], int len, int highQualityThreshold)
     Calculates the quality classes for a range of slices.