Example Documentation

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE Request SYSTEM "../../dtd/aserver.dtd">
<Request Type="Consensus" Host="tomcat.tigr.org" User="erik" Option="All">
  <ReadCollection>
    <Read Id="1" Seqname="seq1" Dir="1" Chem=""/>
    <Read Id="2" Seqname="seq2" Dir="1" Chem=""/>
  </ReadCollection>
  <SliceRange Index="" Gindex="">
    <Slice Index="1" Gindex="1" Existing="A">
      <Nuc>A</Nuc>
      <Qualval>45</Qualval>
      <ReadID>1</ReadID>
    </Slice>
    <Slice Index="2" Gindex="2" Existing="C">
      <Nuc>C</Nuc>
      <Qualval>45</Qualval>
      <ReadID>1</ReadID>
    </Slice>
    <Slice Index="3" Gindex="3" Existing="G">
      <Nuc>G</Nuc>
      <Qualval>45</Qualval>
      <ReadID>1</ReadID>
    </Slice>
    <Slice Index="4" Gindex="4" Existing="T">
      <Nuc>T</Nuc>
      <Qualval>45</Qualval>
      <ReadID>1</ReadID>
    </Slice>
    <Slice Index="5" Gindex="5" Existing="-">
      <Nuc>-</Nuc>
      <Qualval>45</Qualval>
      <ReadID>1</ReadID>
    </Slice>
    <Slice Index="6" Gindex="6" Existing="N">
      <Nuc>A-</Nuc>
      <Qualval>45 20</Qualval>
      <ReadID>1 1</ReadID>
    </Slice>
    <Slice Index="7" Gindex="7" Existing="N">
      <Nuc>C-</Nuc>
      <Qualval>45 20</Qualval>
      <ReadID>1 1</ReadID>
    </Slice>
    <Slice Index="8" Gindex="8" Existing="N">
      <Nuc>G-</Nuc>
      <Qualval>45 20</Qualval>
      <ReadID>1 1</ReadID>
    </Slice>
    <Slice Index="9" Gindex="9" Existing="N">
      <Nuc>T-</Nuc>
      <Qualval>45 20</Qualval>
      <ReadID>1 1</ReadID>
    </Slice>
    <Slice Index="10" Gindex="10" Existing="M">
      <Nuc>AC</Nuc>
      <Qualval>45 20</Qualval>
      <ReadID>1 1</ReadID>
    </Slice>
    <Slice Index="11" Gindex="11" Existing="R">
      <Nuc>AG</Nuc>
      <Qualval>45 20</Qualval>
      <ReadID>1 2</ReadID>
    </Slice>
    <Slice Index="12" Gindex="12" Existing="W">
      <Nuc>AT</Nuc>
      <Qualval>45 20</Qualval>
      <ReadID>1 2</ReadID>
    </Slice>
    <Slice Index="13" Gindex="13" Existing="S">
      <Nuc>CG</Nuc>
      <Qualval>45 20</Qualval>
      <ReadID>1 2</ReadID>
    </Slice>
    <Slice Index="14" Gindex="14" Existing="Y">
      <Nuc>CT</Nuc>
      <Qualval>45 20</Qualval>
      <ReadID>1 2</ReadID>
    </Slice>
    <Slice Index="15" Gindex="15" Existing="K">
      <Nuc>GT</Nuc>
      <Qualval>45 20</Qualval>
      <ReadID>1 2</ReadID>
    </Slice>
    <Slice Index="16" Gindex="16" Existing="M">
      <Nuc>AC-</Nuc>
      <Qualval>45 20 30</Qualval>
      <ReadID>1 2 1</ReadID>
    </Slice>
    <Slice Index="17" Gindex="17" Existing="V">
      <Nuc>ACG</Nuc>
      <Qualval>45 20 30</Qualval>
      <ReadID>1 2 1</ReadID>
    </Slice>
    <Slice Index="18" Gindex="18" Existing="H">
      <Nuc>ACT</Nuc>
      <Qualval>45 20 30</Qualval>
      <ReadID>1 2 1</ReadID>
    </Slice>
    <Slice Index="19" Gindex="19" Existing="D">
      <Nuc>AGT</Nuc>
      <Qualval>45 20 30</Qualval>
      <ReadID>1 2 1</ReadID>
    </Slice>
    <Slice Index="20" Gindex="20" Existing="B">
      <Nuc>CGT</Nuc>
      <Qualval>45 20 30</Qualval>
      <ReadID>1 2 1</ReadID>
    </Slice>
    <Slice Index="21" Gindex="21" Existing="X">
      <Nuc>ACGT</Nuc>
      <Qualval>45 20 30 45</Qualval>
      <ReadID>1 2 1 2</ReadID>
    </Slice>
  </SliceRange>
</Request>
testambiguity.xml
