![]() Slice Tools libSlice |
testambiguity.outOutput of SliceService calculations on testambiguity.xmlThe first run uses the default level of high quality (qv=30). The second explicitly sets the value to 20. Notice the same consensus quality values can be represented by different ambiguity codes depending on the level of high quality used. SliceService -q -v -c testambiguity.xml <Consensus> <Nuc>ACGT-ACGTAAACCGaRWWYD</Nuc> <Qualclass>9 9 9 9 21 13 13 13 13 13 13 13 13 13 13 22 22 22 22 22 22</Qualclass> <Qualval>45 45 45 45 45 25 25 25 25 25 25 25 25 25 25 15 15 15 15 15 3</Qualval> </Consensus> SliceService -q -v -c --highQuality 20 testambiguity.xml <Consensus> <Nuc>ACGT-ACGTAAACCGaRWWYD</Nuc> <Qualclass>9 9 9 9 21 20 20 20 20 20 20 20 20 20 20 22 22 22 22 22 22</Qualclass> <Qualval>45 45 45 45 45 25 25 25 25 25 25 25 25 25 25 15 15 15 15 15 3</Qualval> </Consensus> |