Slice Tools
  • Home
  • SourceForge Page


    • libSlice
  • Home
  • Modules
  • Files
  • Examples
  • Additional Information


    • SourceForge.net Logo
    		  

    testambiguity.out

    Output of SliceService calculations on testambiguity.xml

    The first run uses the default level of high quality (qv=30). The second explicitly sets the value to 20.

    Notice the same consensus quality values can be represented by different ambiguity codes depending on the level of high quality used. 

    SliceService -q -v -c testambiguity.xml
<Consensus>
  <Nuc>ACGT-ACGTAAACCGaRWWYD</Nuc>
  <Qualclass>9 9 9 9 21 13 13 13 13 13 13 13 13 13 13 22 22 22 22 22 22</Qualclass>
  <Qualval>45 45 45 45 45 25 25 25 25 25 25 25 25 25 25 15 15 15 15 15 3</Qualval>
</Consensus>

SliceService -q -v -c --highQuality 20 testambiguity.xml
<Consensus>
  <Nuc>ACGT-ACGTAAACCGaRWWYD</Nuc>
  <Qualclass>9 9 9 9 21 20 20 20 20 20 20 20 20 20 20 22 22 22 22 22 22</Qualclass>
  <Qualval>45 45 45 45 45 25 25 25 25 25 25 25 25 25 25 15 15 15 15 15 3</Qualval>
</Consensus>