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    SliceDataExample.out

    Sample output from SliceDataExample

    Shows the results from running calculations with libSlice. 

    ./SliceDataExample
<Slice Index="0" Gindex="0" Existing="" Depth="4">
  <Base i="0" bc="A" qv="30" rc="1" />
  <Base i="1" bc="A" qv="25" rc="1" />
  <Base i="2" bc="T" qv="20" rc="0" />
  <Base i="3" bc="C" qv="15" rc="0" />
</Slice>

Consensus is A
Quality Base is A
Quality Class is 8
Quality Value is 34
[qvA=34 qvC=0 qvG=0 qvT=0 qvGap=0]

<Slice Index="0" Gindex="0" Existing="" Depth="4">
  <Base i="0" bc="T" qv="30" rc="1" />
  <Base i="1" bc="T" qv="30" rc="0" />
  <Base i="2" bc="T" qv="20" rc="1" />
  <Base i="3" bc="T" qv="15" rc="0" />
</Slice>

Consensus is T
Quality Base is T
Quality Class is 1
Quality Value is 95
[qvA=0 qvC=0 qvG=0 qvT=95 qvGap=0]

<Slice Index="0" Gindex="0" Existing="" Depth="4">
  <Base i="0" bc="C" qv="30" rc="1" />
  <Base i="1" bc="T" qv="30" rc="1" />
  <Base i="2" bc="C" qv="30" rc="0" />
  <Base i="3" bc="T" qv="30" rc="0" />
</Slice>

Consensus is C
Quality Base is C
Quality Class is 15
Quality Value is 3
[qvA=0 qvC=3 qvG=0 qvT=3 qvGap=0]